KH. Husein Muhammad married with Nyai. Hj. Lilik Nihayah Fuadi. From this marriage, he was blessed with 5 sons and daughters. His children include Hilya Auliya born 1991, Layali Hilwa born 1992, Muhammad Fayyaz Mumtaz born 1994, Najla Hammaddah born 2002 and Fazla Muhammad born 2003.
Gus Baha is the son of the great religious teacher of Holy Qur’an and the Pesantren leader in Tafidzul Qur’an LP3IA whose named KH. Nursalim al- Hafizh from Narukan, Kragan district, Rembang regency, Central Java.